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1

Response to the commentary on ‘A genome-wide association study in Caucasian women suggests the involvement of HLA gene in the severity of facial solar lentigines’

Laville, Vincent, Le Clerc, Sigrid, Ezzedine, Khaled, Zagury, Jean-François

Journal:

Pigment Cell & Melanoma Research

Year:

2017

Language:

english

File:

PDF, 34 KB

english, 2017

2

Computation of haplotypes on SNPs subsets: advantage of the "global method"

Cédric Coulonges, Olivier Delaneau, Manon Girard, Hervé Do, Ronald Adkins, Jean-Louis Spadoni, Jean-François Zagury

Journal:

Year:

2006

Language:

english

File:

PDF, 579 KB

english, 2006

3

Associations of theIL2Rα,IL4Rα,IL10Rα, andIFNγR1cytokine receptor genes with AIDS progression in a French AIDS cohort

Hervé Do, Alexandre Vasilescu, Gora Diop, Thomas Hirtzig, Cédric Coulonges, Taoufik Labib, Simon C. Heath, Jean-Louis Spadoni, Amu Therwath, Mark Lathrop, Fumihiko Matsuda, Jean-François Zagury

Journal:

Year:

2006

Language:

english

File:

PDF, 1.09 MB

english, 2006

4

ISHAPE: new rapid and accurate software for haplotyping

Olivier Delaneau, Cédric Coulonges, Pierre-Yves Boelle, George Nelson, Jean-Louis Spadoni, Jean-François Zagury

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 369 KB

english, 2007

5

Shape-IT: new rapid and accurate algorithm for haplotype inference

Olivier Delaneau, Cédric Coulonges, Jean-François Zagury

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 396 KB

english, 2008

6

Genomic approach of AIDS pathogenesis: exhaustive genotyping of the TNFR1 gene in a French AIDS cohort

Gora Diop, Jean-Louis Spadoni, Hervé Do, Thomas Hirtzig, Cédric Coulonges, Taoufik Labib, Wolfgang Issing, Jay Rappaport, Amu Therwath, Mark Lathrop, Fumihiko Matsuda, Jean-François Zagury

Journal:

Biomedicine & Pharmacotherapy

Year:

2005

Language:

english

File:

PDF, 241 KB

english, 2005

7

Genomic approach of AIDS pathogenesis: exhaustive genotyping of the TNFR1 gene in a French AIDS cohort

Gora Diop, Jean-Louis Spadoni, Hervé Do, Thomas Hirtzig, Cédric Coulonges, Taoufik Labib, Wolfgang Issing, Jay Rappaport, Amu Therwath, Mark Lathrop, Fumihiko Matsuda, Jean-François Zagury

Journal:

Biomedicine & Pharmacotherapy

Year:

2005

Language:

english

File:

PDF, 90 KB

english, 2005

8

Exploration of associations between phospholipase A2 gene family polymorphisms and AIDS progression using the SNPlex™ method

Sophie Limou, Cédric Coulonges, Mario Foglio, Simon Heath, Gora Diop, Sigrid Leclerc, Thomas Hirtzig, Jean-Louis Spadoni, Amu Therwath, Gérard Lambeau, Ivo Gut, Jean-François Zagury

Journal:

Biomedicine & Pharmacotherapy

Year:

2008

Language:

english

File:

PDF, 313 KB

english, 2008

9

Active immunization against IL-23p19 improves experimental arthritis

Rojo Anthony Ratsimandresy, Emilie Duvallet, Eric Assier, Luca Semerano, Laure Delavallée, Natacha Bessis, Jean-François Zagury, Marie-Christophe Boissier

Journal:

Year:

2011

Language:

english

File:

PDF, 1.00 MB

english, 2011

10

Specificity and effect on apoptosis of Tat antibodies from vaccinated and SHIV-infected rhesus macaques and HIV-infected individuals

Guillaume Belliard, Anthony Romieu, Jean-François Zagury, Hayet Dali, Olivier Chaloin, Roger Le Grand, Erwann Loret, Jean-Paul Briand, Bernard Roques, Claude Desgranges, Sylviane Muller

Journal:

Year:

2003

Language:

english

File:

PDF, 461 KB

english, 2003

11

Antibodies to Tat and Vpr in the GRIV cohort: differential association with maintenance of long-term non-progression status in HIV-1 infection

Max W Richardson, Jyotika Mirchandani, Joseph Duong, Sammy Grimaldo, Virginia Kocieda, Houria Hendel, Kamel Khalili, Jean-François Zagury, Jay Rappaport

Journal:

Biomedicine & Pharmacotherapy

Year:

2003

Language:

english

File:

PDF, 356 KB

english, 2003

12

Improved whole-chromosome phasing for disease and population genetic studies

Delaneau, Olivier, Zagury, Jean-Francois, Marchini, Jonathan

Journal:

Year:

2012

Language:

english

File:

PDF, 247 KB

english, 2012

13

32 bp CCR-5 gene deletion and resistance to fast progression in HIV-1 infected heterozygotes

Jay Rappaport, Yi-Yun Cho, Houria Hendel, Elissa J Schwartz, François Schachter, Jean-François Zagury

Journal:

Year:

1997

Language:

english

File:

PDF, 49 KB

english, 1997

14

Haplotype Estimation Using Sequencing Reads

Delaneau, Olivier, Howie, Bryan, Cox, Anthony J., Zagury, Jean-François, Marchini, Jonathan

Journal:

The American Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 708 KB

english, 2013

15

A linear complexity phasing method for thousands of genomes

Delaneau, Olivier, Marchini, Jonathan, Zagury, Jean-François

Journal:

Year:

2011

Language:

english

File:

PDF, 662 KB

english, 2011

16

Identification of HIV-1 sequences targeted by the miRNA Induced silencing complex (miRISC) using Argonaute 2 cross-linking and immunoprecipitation (HITS-CLIP)

Eckenfelder, Agathe, Restrepo, Natalia, Ulveling, Damien, Zagury, Jean-François, Seitz, Hervé, Emiliani, Stéphane, Gallois-Montbrun, Sarah

Journal:

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

17

NRLiSt BDB, the Manually Curated Nuclear Receptors Ligands and Structures Benchmarking Database

Lagarde, Nathalie, Ben Nasr, Nesrine, Jérémie, Aurore, Guillemain, Hélène, Laville, Vincent, Labib, Taoufik, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Medicinal Chemistry

Year:

2014

Language:

english

File:

PDF, 1.89 MB

english, 2014

18

Cytopathic Effect of Human Immunodeficiency Virus in T4 Cells is Linked to the Last Stage of Virus Infection

Regine Leonard, Daniel Zagury, Isabelle Desportes, Jacky Bernard, Jean-Francois Zagury and Robert C. Gallo

Journal:

Proceedings of the National Academy of Sciences

Year:

1988

Language:

english

File:

PDF, 1.13 MB

english, 1988

19

C-C Chemokines, Pivotal in Protection against HIV Type 1 Infection

Daniel Zagury, Abderrahim Lachgar, Vida Chams, Lat S. Fall, Jacky Bernard, Jean-Francois Zagury, Bernard Bizzini, Alessandro Gringeri, Elena Santagostino, Jay Rappaport, Michael Feldman, Stephen J. O'

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.31 MB

english, 1998

20

Interferon α and Tat Involvement in the Immunosuppression of Uninfected T Cells and C-C Chemokine Decline in AIDS

Daniel Zagury, Abderrahim Lachgar, Vida Chams, Lat S. Fall, Jacky Bernard, Jean-Francois Zagury, Bernard Bizzini, Alessandro Gringeri, Elena Santagostino, Jay Rappaport, Michael Feldman, Arsene Burny

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.48 MB

english, 1998

21

Multiple Structures for Virtual Ligand Screening: Defining Binding Site Properties-Based Criteria to Optimize the Selection of the Query

Ben Nasr, Nesrine, Guillemain, Hélène, Lagarde, Nathalie, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Chemical Information and Modeling

Year:

2013

Language:

english

File:

PDF, 2.88 MB

english, 2013

22

Importance of the Pharmacological Profile of the Bound Ligand in Enrichment on Nuclear Receptors: Toward the Use of Experimentally Validated Decoy Ligands

Lagarde, Nathalie, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 7.81 MB

english, 2014

23

Udock, the interactive docking entertainment system

Levieux, Guillaume, Tiger, Guillaume, Mader, Stéphanie, Zagury, Jean-François, Natkin, Stéphane, Montes, Matthieu

Journal:

Faraday Discussions

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

24

T-CELL AND NEURONAL APOPTOSIS IN HIV INFECTION: IMPLICATIONS FOR THERAPEUTIC INTERVENTION

RÉGULIER, EMMANUEL G., REISS, KRYZSZTOF, KHALILI, KAMEL, AMINI, SHOHREH, RAPPAPORT, JAY, ZAGURY, JEAN-FRANÇOIS, KATSIKIS, PETER D.

Journal:

International Reviews Of Immunology

Year:

2004

Language:

english

File:

PDF, 951 KB

english, 2004

25

The Interferon Antagonist Sarcolectin in the Progress of HIV-1 Infection and in AIDS

Kaba, Aboubacar, Ilunga, Alain-Jose L., Achour, Ammar, Zagury, Jean-François, Chany, Charles

Journal:

Journal of Interferon & Cytokine Research

Year:

2002

Language:

english

File:

PDF, 168 KB

english, 2002

26

Filtering Redundancies For Sequence Similarity Search Programs

Cantalloube, Hubert, Chomilier, Jacques, Chiusa, Sylvain, Lonquety, Mathieu, Spadoni, Jean-Louis, Zagury, Jean-François

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2005

Language:

english

File:

PDF, 352 KB

english, 2005

27

Genetic Analysis of a New Subgroup of Human and Simian T-Lymphotropic Retroviruses: HTLV-IV, LAV-2, SBL-6669, and STLV-III AGM

FRANCHINI, GENOVEFFA, COLLALTI, ENRICO, ARYA, SURESH K., FENYÖ, EVA M., BIBERFELD, GUNNEL, ZAGURY, J. FRANCOIS, KANKI, PHYLLIS J., WONG-STAAL, FLOSSIE, GALLO, ROBERT C.

Journal:

AIDS Research and Human Retroviruses

Year:

1987

Language:

english

File:

PDF, 4.25 MB

english, 1987

28

Vaccination with cytokines in autoimmune diseases

Delavallée, Laure, Assier, Eric, Denys, Anne, Falgarone, Géraldine, Zagury, Jean-François, Muller, Sylvianne, Bessis, Natacha, Boissier, Marie-Christophe

Journal:

Annals of Medicine

Year:

2008

Language:

english

File:

PDF, 302 KB

english, 2008

29

Targeting IL-6 by both passive or active immunization strategies prevents bleomycin-induced skin fibrosis

Desallais, Lucille, Avouac, Jérôme, Fréchet, Maxime, Elhai, Muriel, Ratsimandresy, Rojo, Montes, Matthieu, Mouhsine, Hadley, Do, Hervé, Zagury, Jean-François, Allanore, Yannick

Journal:

Arthritis Research & Therapy

Year:

2014

Language:

english

File:

PDF, 3.18 MB

english, 2014

30

ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium

Johnson, Randall C, Nelson, George W, Zagury, Jean-Francois, Winkler, Cheryl A

Journal:

Year:

2015

Language:

english

File:

PDF, 682 KB

english, 2015

31

Exhaustive Genotyping of the CEM15 (APOBEC3G) Gene and Absence of Association with AIDS Progression in a French Cohort

Do, Hervé, Vasilescu, Alexandre, Diop, Gora, Hirtzig, Thomas, Heath, Simon C., Coulonges, Cédric, Rappaport, Jay, Therwath, Amu, Lathrop, Mark, Matsuda, Fumihiko, Zagury, Jean‐François

Journal:

The Journal of Infectious Diseases

Year:

2005

Language:

english

File:

PDF, 106 KB

english, 2005

32

Benchmarking Data Sets for the Evaluation of Virtual Ligand Screening Methods: Review and Perspectives

Lagarde, Nathalie, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 712 KB

english, 2015

33

Immunogenetics: Genome-Wide Association of Non-Progressive HIV and Viral Load Control: HLA Genes and Beyond

Limou, Sophie, Zagury, Jean-François

Journal:

Frontiers in Immunology

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

34

DRAM Triggers Lysosomal Membrane Permeabilization and Cell Death in CD4+ T Cells Infected with HIV

Laforge, Mireille, Limou, Sophie, Harper, Francis, Casartelli, Nicoletta, Rodrigues, Vasco, Silvestre, Ricardo, Haloui, Houda, Zagury, Jean-Francois, Senik, Anna, Estaquier, Jerome, Aiken, Christopher

Journal:

Year:

2013

Language:

english

File:

PDF, 2.36 MB

english, 2013

35

JASSA: a comprehensive tool for prediction of SUMOylation sites and SIMs

Beauclair, Guillaume, Bridier-Nahmias, Antoine, Zagury, Jean-François, Saïb, Ali, Zamborlini, Alessia

Journal:

Year:

2015

Language:

english

File:

PDF, 1.29 MB

english, 2015

36

Identification of IL7RA Risk Alleles for Rapid Progression During HIV-1 Infection: A Comprehensive Study in the GRIV Cohort

Limou, Sophie, Melica, Giovanna, Coulonges, Cedric, Lelievre, Jean-Daniel, Do, Herve, McGinn, Steven, G. Gut, Ivo, Levy, Yves, Zagury, Jean-Francois

Journal:

Current HIV Research

Year:

2012

Language:

english

File:

PDF, 826 KB

english, 2012

37

Predictiveness curves in virtual screening

Empereur-mot, Charly, Guillemain, Hélène, Latouche, Aurélien, Zagury, Jean-François, Viallon, Vivian, Montes, Matthieu

Journal:

Journal of Cheminformatics

Year:

2015

Language:

english

File:

PDF, 6.00 MB

english, 2015

38

Stress-induced neuroinflammation is mediated by GSK3-dependent TLR4 signaling that promotes susceptibility to depression-like behavior

Cheng, Yuyan, Pardo, Marta, Armini, Rubia de Souza, Martinez, Ana, Mouhsine, Hadley, Zagury, Jean-Francois, Jope, Richard S., Beurel, Eleonore

Journal:

Brain, Behavior, and Immunity

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

39

Anti-Cytokine Therapeutics: History and Update

Ratsimandresy, Rojo, Rappaport, Jay, Zagury, Jean-Francois

Journal:

Current Pharmaceutical Design

Year:

2009

Language:

english

File:

PDF, 633 KB

english, 2009

40

Haplotype estimation for biobank-scale data sets

O'Connell, Jared, Sharp, Kevin, Shrine, Nick, Wain, Louise, Hall, Ian, Tobin, Martin, Zagury, Jean-Francois, Delaneau, Olivier, Marchini, Jonathan

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 363 KB

english, 2016

41

Validation of Genetic Case-Control Studies in AIDS and Application to the CX3CR1 Polymorphism

Hendel, Houria, Winkler, Cheryl, An, Ping, Roemer-Binns, Elisabeth, Nelson, George, Haumont, Philippe, O'Brien, Steve, Khalilli, Kamel, Zagury, Daniel, Rappaport, Jay, Zagury, Jean-François

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2001

File:

PDF, 198 KB

2001

42

Validation of Genetic Case-Control Studies in AIDS and Application to the CX3CR1 Polymorphism

Hendel, Houria, Winkler, Cheryl, An, Ping, Roemer-Binns, Elisabeth, Nelson, George, Haumont, Philippe, O'Brien, Steve, Khalilli, Kamel, Zagury, Daniel, Rappaport, Jay, Zagury, Jean-François

Journal:

JAIDS Journal of Acquired Immune Deficiency Syndromes

Year:

2001

File:

PDF, 198 KB

2001

43

Immunization against an IL-6 peptide induces anti-IL-6 antibodies and modulates the Delayed-Type Hypersensitivity reaction in cynomolgus monkeys

Desallais, Lucille, Bouchez, Caroline, Mouhsine, Hadley, Moreau, Gabriel, Ratsimandresy, Rojo, Montes, Matthieu, Do, Hervé, Quintin-Colonna, Françoise, Zagury, Jean-François

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 826 KB

english, 2016

44

Screening Explorer – An interactive tool for the analysis of screening results

Empereur-Mot, Charly, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Chemical Information and Modeling

Year:

2016

Language:

english

File:

PDF, 958 KB

english, 2016

45

Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner

Eckenfelder, Agathe, Ségéral, Emmanuel, Pinzón, Natalia, Ulveling, Damien, Amadori, Céline, Charpentier, Marine, Nidelet, Sabine, Concordet, Jean-Paul, Zagury, Jean-François, Paillart, Jean-Christophe

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 4.09 MB

english, 2016

46

Discriminating agonist and antagonist ligands of the nuclear receptors using 3D-pharmacophores

Lagarde, Nathalie, Delahaye, Solenne, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Cheminformatics

Year:

2016

Language:

english

File:

PDF, 5.54 MB

english, 2016

47

Predicting the affinity of Farnesoid X Receptor ligands through a hierarchical ranking protocol: a D3R Grand Challenge 2 case study

Réau, Manon, Langenfeld, Florent, Zagury, Jean-François, Montes, Matthieu

Journal:

Journal of Computer-Aided Molecular Design

Year:

2017

Language:

english

File:

PDF, 3.38 MB

english, 2017

48

New selective cyclooxygenase-2 inhibitors from cyclocoumarol: Synthesis, characterization, biological evaluation and molecular modeling

Rayar, Anita Marie, Lagarde, Nathalie, Martin, Frederique, Blanchard, Florent, Liagre, Bertrand, Ferroud, Clotilde, Zagury, Jean-François, Montes, Matthieu, Sylla-Iyarreta Veitía, Maité

Journal:

European Journal of Medicinal Chemistry

Year:

2018

Language:

english

File:

PDF, 3.09 MB

english, 2018

49

HLA-check: evaluating HLA data from SNP information

Jeanmougin, Marc, Noirel, Josselin, Coulonges, Cédric, Zagury, Jean-François

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 590 KB

english, 2017

50

IL-1 Vaccination Is Suitable for Treating Inflammatory Diseases

Assier, Eric, Bessis, Natacha, Zagury, Jean-François, Boissier, Marie-Christophe

Journal:

Frontiers in Pharmacology

Year:

2017

Language:

english

File:

PDF, 259 KB

english, 2017

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